SecReT6, T6SS database

Vibrio alginolyticus

Experimental investigation has been performed.

Bioinformatics investigation has been performed

T6SS ID	Type	Organism	Replicon (Accession)	Location	Function
T6SS00794	i5	Vibrio alginolyticus EPJS	chromosome (FJ790777)	1..31102	anti-bacterial
T6SS00793	i1	Vibrio alginolyticus EPJS	chromosome (FJ790776)	1..32212	effector translocation
T6SS00939	i5	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	1440993..1467006	anti-bacterial
T6SS01224	i1	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	100481..131233	anti-bacterial

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Regulator ID	Locus tag (Gene)	Related T6SS	Regulator type	Regulatory pathway	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID	Target (Regulation)
REG0265	luxS	T6SS00793	protein	QS regulatory pathway	Vibrio alginolyticus strain EPJS	chromosome (FJ790776)	-	-	hcp1 transcript (↓)
REG0257	VEPGS_0614 (PppA)	T6SS00794	protein	Tpp	Vibrio alginolyticus strain EPJS	chromosome (FJ790777)	15765..16880 (+)	225382180	LuxR (↓)
REG0258	VEPGS_0606 (PpkA2)	T6SS00794	protein	Tpp	Vibrio alginolyticus strain EPJS	chromosome (FJ790777)	3227..5377 (-)	225382172	LuxR (↓); VEPGS_0610 (DotU2) (↓)
REG0259	VEPGS_0607 (Fha2)	T6SS00794	protein	Tpp	Vibrio alginolyticus strain EPJS	chromosome (FJ790777)	5690..6775 (+)	225382173	VEPGS_0610 (DotU2) (↓)
REG0260	EPGS_00471 (VtsR)	T6SS00794	protein	QS regulatory pathway	Vibrio alginolyticus strain EPJS	chromosome (FJ790777)	-	-	LuxO (↓)
REG0261	EPGS_00471 (VtsR)	T6SS00793	protein	QS regulatory pathway	Vibrio alginolyticus strain EPJS	chromosome (FJ790776)	-	-	LuxO (↑)
REG0262	luxR	T6SS00794	protein	QS regulatory pathway	Vibrio alginolyticus strain EPJS	chromosome (FJ790777)	-	-	T6SS2 transcript and expression (↓)
REG0263	luxR	T6SS00793	protein	QS regulatory pathway	Vibrio alginolyticus strain EPJS	chromosome (FJ790776)	-	-	T6SS1 transcript and expression (↑)
REG0264	VEPGS_0621 (pppA)	T6SS00793	protein	Tpp; QS regulatory pathway	Vibrio alginolyticus strain EPJS	chromosome (FJ790777)	23577..24245 (+)	225382187	Unknown (↑); T6SS1 transcript (↑); hcp1 transcript (↓)
REG0266	LuxO	T6SS00793	protein	QS regulatory pathway	Vibrio alginolyticus strain EPJS	chromosome (FJ790776)	-	-	hcp1 transcript (↓)
REG0267	LuxO	T6SS00794	protein	QS regulatory pathway	Vibrio alginolyticus strain EPJS	chromosome (FJ790777)	-	-	Unknown (↑)
REG0268	rpoN	T6SS00793	protein	Transcription regulator	Vibrio alginolyticus strain EPJS	chromosome (FJ790776)	-	-	T6SS1 transcript (↓)
REG0269	VasH	T6SS00793	protein	Transcription regulator	Vibrio alginolyticus strain EPJS	chromosome (FJ790776)	-	-	T6SS1 transcript (↓)
REG0275	V12G01_21538 (LuxR)	T6SS00939	protein	QS regulatory pathway	Vibrio alginolyticus 12G01	chromosome (AAPS01000053)	13551..14165 (-)	91187814	T6SS2 transcripts (↓); V12G01-18672 (vqsA) promotor
REG0276	V12G01_19736 (TfoX)	T6SS00939	protein	Transcription regulator	Vibrio alginolyticus 12G01	chromosome (AAPS01000019)	47689..48276 (-)	91189146	T6SS2 transcripts (↓)
REG0277	V12G01_20658 (TfoY)	T6SS00939	protein	Transcription regulator	Vibrio alginolyticus 12G01	chromosome (AAPS01000039)	21665..22255 (+)	91188194	T6SS transcripts (↓)
REG0278	V12G01_20201 (H-NS)	T6SS00939	protein	Transcription regulator	Vibrio alginolyticus 12G01	chromosome (AAPS01000015)	63783..64190 (+)	91189474	VaT6SS1 transcripts (↑)
REG0279	V12G01_18672 (vqsA)	T6SS00939	protein	QS regulatory pathway	Vibrio alginolyticus 12G01	chromosome (AAPS01000003)	114208..115086 (+)	91191289	V12G01-21538 (luxR) promoter (↓); V12G01-14830 (aphA) promoter (↓); V12G01-18672 (vqsA) promotor (↓)
REG0280	V12G01_10813 (AsnC)	T6SS00939	protein	QS regulatory pathway	Vibrio alginolyticus 12G01	chromosome (AAPS01000004)	181050..181484 (-)	91191052	V12G01-21538 (luxR) promoter; V12G01-14830 (aphA) promoter
REG0281	V12G01_02325 (HP)	T6SS00939	protein	QS regulatory pathway	Vibrio alginolyticus 12G01	chromosome (AAPS01000004)	115263..116411 (+)	91190993	V12G01-21538 (luxR) promoter; V12G01-14830 (aphA) promoter
REG0282	V12G01_01665 (HP)	T6SS00939	protein	QS regulatory pathway	Vibrio alginolyticus 12G01	chromosome (AAPS01000007)	185299..185712 (+)	91190406	V12G01-21538 (luxR) promoter; V12G01-14830 (aphA) promoter
REG0283	V12G01_06711 (HP)	T6SS00939	protein	QS regulatory pathway	Vibrio alginolyticus 12G01	chromosome (AAPS01000024)	47707..48585 (-)	91188835	V12G01-21538 (luxR) promoter; V12G01-14830 (aphA) promoter
REG0284	V12G01_16177 (MetR)	T6SS00939	protein	QS regulatory pathway	Vibrio alginolyticus 12G01	chromosome (AAPS01000023)	58420..59331 (-)	91188901	V12G01-21538 (luxR) promoter; V12G01-14830 (aphA) promoter
REG0285	V12G01_02620 (SoxR)	T6SS00939	protein	QS regulatory pathway	Vibrio alginolyticus 12G01	chromosome (AAPS01000004)	181050..181484 (-)	91191052	V12G01-21538 (luxR) promoter; V12G01-14830 (aphA) promoter
REG0287	V12G01_14830 (aphA)	T6SS00939	protein	QS regulatory pathway	Vibrio alginolyticus 12G01	chromosome (AAPS01000027)	42305..42880 (+)	91188695	V12G01-18672 (vqsA) promotor

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Effector ID	Locus tag (Gene)	Classification	Cognate immunity protein	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID
EFF01454	V12G01_RS33945	Tde	IMU00336	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902590)	213122..213841 (+)	491519344
EFF01455	V12G01_RS35200	Tde	IMU00337	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902590)	504752..509137 (-)	491519899
EFF01457	V12G01_RS33215	Tme	IMU00339	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902590)	51252..54761 (-)	491519127
EFF01456	V12G01_RS27070	Tme	IMU00338	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	494035..494997 (+)	491516494
EFF01461	V12G01_RS25410	Tpe	-	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	98312..100468 (-)	491515716
EFF01460	V12G01_RS25535	Tse	-	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	138873..140624 (-)	491515792
EFF01019	VEPGS_0021 (hcp1)	-	-	T6SS00793	Vibrio alginolyticus strain EPJS	chromosome (FJ790776)	27427..27945 (-)	225382164
EFF01534	V12G01_01540 (hcp1)	-	-	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	127580..128098 (-)	491515782
EFF01535	V12G01_07583 (hcp2)	-	-	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	1464340..1464819 (+)	491518336
EFF01536	V12G01_01440 (PAAR)	-	-	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	100481..101938 (-)	491515718
EFF01537	V12G01_07588 (VgrG2)	-	-	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	1464869..1466704 (+)	491518337
EFF01824	VEPGS_0623 (hcp2)	-	-	T6SS00794	Vibrio alginolyticus strain EPJS	chromosome (FJ790777)	27328..27807 (+)	225382189

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Immunity protein ID	Locus tag (Gene)	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Cognate effector
IMU00336	V12G01_RS33950	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902590)	213838..214413 (+)	91190683	EFF01454
IMU00337	V12G01_RS35195	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902590)	503860..504759 (-)	91191211	EFF01455
IMU00338	V12G01_03170	T6SS00939	Vibrio alginolyticus 12G01	chromosome (CH902589)	493354..493740 (+)	91191162	EFF01456
IMU00339	V12G01_RS33210	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902590)	50304..51248 (-)	91188895	EFF01457
IMU00340	V12G01_RS33565	T6SS00939	Vibrio alginolyticus 12G01	chromosome (NZ_CH902590)	137211..138782 (+)	91190385	-
IMU00341	V12G01_01430	T6SS01224	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	97561..98319 (-)	91190359	-
IMU00348	EPGS_03541 (rhsI1)	T6SS00794	Vibrio alginolyticus strain EPJS	chromosome (FJ790777)	-	-	-
IMU00359	V12G01_RS26200	T6SS01224	Vibrio alginolyticus 12G01	chromosome (NZ_CH902589)	308691..309341 (-)	91190980	EFF01441

Experimental investigation has been performed.

Bioinformatics investigation has been performed

ID	Locus tag (Gene)	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Response to T6SS attack	Known or putative function

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Accessory protein ID	Locus tag (Gene)	Related T6SS	Type	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Related structure protein	Related effector